Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: TTC39C-AS1 ENSG00000264745

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Description

TTC39C antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51321]

Location

Chromosome 18: 23,987,749-24,015,521 reverse strand.

GRCh38:CM000680.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000735309.1	TTC39C-AS1-202	827	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000579713.1	TTC39C-AS1-201	817	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000735318.1	TTC39C-AS1-211	787	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000735314.1	TTC39C-AS1-207	716	No protein	-	lncRNA		-	-
ENST00000735317.1	TTC39C-AS1-210	651	No protein	-	lncRNA		-	-
ENST00000735312.1	TTC39C-AS1-205	647	No protein	-	lncRNA		-	-
ENST00000735313.1	TTC39C-AS1-206	643	No protein	-	lncRNA		-	-
ENST00000735321.1	TTC39C-AS1-214	630	No protein	-	lncRNA		-	-
ENST00000735319.1	TTC39C-AS1-212	593	No protein	-	lncRNA		-	-
ENST00000735315.1	TTC39C-AS1-208	592	No protein	-	lncRNA		-	-
ENST00000735322.1	TTC39C-AS1-215	592	No protein	-	lncRNA		-	-
ENST00000735320.1	TTC39C-AS1-213	585	No protein	-	lncRNA		-	-
ENST00000735310.1	TTC39C-AS1-203	565	No protein	-	lncRNA		-	-
ENST00000735323.1	TTC39C-AS1-216	549	No protein	-	lncRNA		-	-
ENST00000735311.1	TTC39C-AS1-204	507	No protein	-	lncRNA		-	-
ENST00000735316.1	TTC39C-AS1-209	432	No protein	-	lncRNA		-	-
ENST00000735324.1	TTC39C-AS1-217	387	No protein	-	lncRNA		-	-

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Summary

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