Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC02201 ENSG00000251538

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Description

long intergenic non-protein coding RNA 2201 [Source:HGNC Symbol;Acc:HGNC:53067]

Location

Chromosome 5: 122,628,947-122,741,974 reverse strand.

GRCh38:CM000667.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000719844.1	LINC02201-208	788	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000511194.5	LINC02201-202	1651	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000649085.1	LINC02201-204	1506	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719851.1	LINC02201-215	1282	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000656860.1	LINC02201-205	1243	No protein	-	lncRNA		-	-
ENST00000719853.1	LINC02201-217	1133	No protein	-	lncRNA		-	-
ENST00000514657.2	LINC02201-203	1075	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000669389.1	LINC02201-207	1037	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000719846.1	LINC02201-210	884	No protein	-	lncRNA		-	-
ENST00000659891.1	LINC02201-206	868	No protein	-	lncRNA		-	-
ENST00000719849.1	LINC02201-213	732	No protein	-	lncRNA		-	-
ENST00000719845.1	LINC02201-209	713	No protein	-	lncRNA		-	-
ENST00000719847.1	LINC02201-211	677	No protein	-	lncRNA		-	-
ENST00000719848.1	LINC02201-212	649	No protein	-	lncRNA		-	-
ENST00000719850.1	LINC02201-214	641	No protein	-	lncRNA		-	-
ENST00000719852.1	LINC02201-216	506	No protein	-	lncRNA		-	-
ENST00000508992.1	LINC02201-201	468	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

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Summary

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