Gene: LINC00398 ENSG00000237879

Description

long intergenic non-protein coding RNA 398 [Source:HGNC Symbol;Acc:HGNC:42727]

Gene Synonyms

LINC00545

Location

Chromosome 13: 30,803,176-30,897,148 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 42 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000715721.1	LINC00398-206	979	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000414407.2	LINC00398-201	2041	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000799424.1	LINC00398-231	1903	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799406.1	LINC00398-213	1441	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799431.1	LINC00398-238	1196	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799419.1	LINC00398-226	1182	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799404.1	LINC00398-211	1106	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799408.1	LINC00398-215	1073	No protein	-	lncRNA	-	-
ENST00000799418.1	LINC00398-225	1050	No protein	-	lncRNA	-	-
ENST00000799403.1	LINC00398-210	1031	No protein	-	lncRNA	-	-
ENST00000799416.1	LINC00398-223	1003	No protein	-	lncRNA	-	-
ENST00000799435.1	LINC00398-242	925	No protein	-	lncRNA	-	-
ENST00000799433.1	LINC00398-240	918	No protein	-	lncRNA	-	-
ENST00000799423.1	LINC00398-230	913	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000799422.1	LINC00398-229	888	No protein	-	lncRNA	-	-
ENST00000799421.1	LINC00398-228	837	No protein	-	lncRNA	-	-
ENST00000799412.1	LINC00398-219	814	No protein	-	lncRNA	-	-
ENST00000799405.1	LINC00398-212	764	No protein	-	lncRNA	-	-
ENST00000799407.1	LINC00398-214	756	No protein	-	lncRNA	-	-
ENST00000799434.1	LINC00398-241	713	No protein	-	lncRNA	-	-
ENST00000690833.2	LINC00398-204	702	No protein	-	lncRNA	-	-
ENST00000799429.1	LINC00398-236	670	No protein	-	lncRNA	-	-
ENST00000799401.1	LINC00398-208	662	No protein	-	lncRNA	-	-
ENST00000799414.1	LINC00398-221	656	No protein	-	lncRNA	-	-
ENST00000799410.1	LINC00398-217	634	No protein	-	lncRNA	-	-
ENST00000799420.1	LINC00398-227	626	No protein	-	lncRNA	-	-
ENST00000799426.1	LINC00398-233	626	No protein	-	lncRNA	-	-
ENST00000799413.1	LINC00398-220	600	No protein	-	lncRNA	-	-
ENST00000799415.1	LINC00398-222	600	No protein	-	lncRNA	-	-
ENST00000799428.1	LINC00398-235	577	No protein	-	lncRNA	-	-
ENST00000665143.1	LINC00398-203	576	No protein	-	lncRNA	-	-
ENST00000799432.1	LINC00398-239	576	No protein	-	lncRNA	-	-
ENST00000799409.1	LINC00398-216	575	No protein	-	lncRNA	-	-
ENST00000799425.1	LINC00398-232	561	No protein	-	lncRNA	-	-
ENST00000799400.1	LINC00398-207	538	No protein	-	lncRNA	-	-
ENST00000799402.1	LINC00398-209	533	No protein	-	lncRNA	-	-
ENST00000440633.2	LINC00398-202	522	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000693404.3	LINC00398-205	508	No protein	-	lncRNA	-	-
ENST00000799427.1	LINC00398-234	501	No protein	-	lncRNA	-	-
ENST00000799417.1	LINC00398-224	482	No protein	-	lncRNA	-	-
ENST00000799430.1	LINC00398-237	465	No protein	-	lncRNA	-	-
ENST00000799411.1	LINC00398-218	399	No protein	-	lncRNA	-	-

Gene: LINC00398 ENSG00000237879

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Gene: LINC00398 ENSG00000237879

Summary

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