gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA [Source:HGNC Symbol;Acc:HGNC:51308]
LINC01540, LNCRNA-UC002KMD.1, RP11-838N2.4, TCONS_00026238
Chromosome 18: 3,466,200-3,487,049 forward strand.
GRCh38:CM000680.2
This gene has 14 transcripts (splice variants).
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENST00000790303.1 | GAPLINC-206 | 603 | No protein | - | lncRNA | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, | |
| ENST00000579007.6 | GAPLINC-202 | 647 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000790310.1 | GAPLINC-213 | 624 | No protein | - | lncRNA | - | - | |
| ENST00000578664.2 | GAPLINC-201 | 623 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000581029.5 | GAPLINC-203 | 613 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000790304.1 | GAPLINC-207 | 559 | No protein | - | lncRNA | - | A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, | |
| ENST00000790305.1 | GAPLINC-208 | 548 | No protein | - | lncRNA | - | - | |
| ENST00000790308.1 | GAPLINC-211 | 503 | No protein | - | lncRNA | - | - | |
| ENST00000581442.6 | GAPLINC-204 | 501 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000790306.1 | GAPLINC-209 | 494 | No protein | - | lncRNA | - | - | |
| ENST00000700774.2 | GAPLINC-205 | 443 | No protein | - | lncRNA | - | - | |
| ENST00000790307.1 | GAPLINC-210 | 419 | No protein | - | lncRNA | - | - | |
| ENST00000790309.1 | GAPLINC-212 | 395 | No protein | - | lncRNA | - | - | |
| ENST00000790311.1 | GAPLINC-214 | 304 | No protein | - | lncRNA | - | - |
