Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SLC39A13-AS1 ENSG00000255197

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Description

SLC39A13 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:56351]

Gene Synonyms

AC090559.1, LOUP

Location

Chromosome 11: 47,381,509-47,409,369 reverse strand.

GRCh38:CM000673.2

About this gene

This gene has 11 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000666926.1	SLC39A13-AS1-206	2732	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000655367.2	SLC39A13-AS1-204	2636	No protein	-	lncRNA		-	-
ENST00000691591.1	SLC39A13-AS1-208	2635	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000689628.1	SLC39A13-AS1-207	2393	No protein	-	lncRNA		-	-
ENST00000532340.2	SLC39A13-AS1-202	2374	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000659838.2	SLC39A13-AS1-205	2329	No protein	-	lncRNA		-	-
ENST00000532943.5	SLC39A13-AS1-203	851	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000527426.1	SLC39A13-AS1-201	836	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000784712.1	SLC39A13-AS1-210	811	No protein	-	lncRNA		-	-
ENST00000784713.1	SLC39A13-AS1-211	591	No protein	-	lncRNA		-	-
ENST00000784711.1	SLC39A13-AS1-209	505	No protein	-	lncRNA		-	-

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Summary

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