Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: NIHCOLE ENSG00000251026

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Description

ncRNA involved in NHEJ oncogenic ligation efficiency [Source:HGNC Symbol;Acc:HGNC:53024]

Gene Synonyms

LINC02163, RP11-138J23.1

Location

Chromosome 5: 104,063,083-104,430,245 forward strand.

GRCh38:CM000667.2

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000666145.1	NIHCOLE-204	1333	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000731153.1	NIHCOLE-212	1809	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000721479.1	NIHCOLE-206	1314	No protein	-	lncRNA		-	-
ENST00000665271.1	NIHCOLE-203	1110	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000662211.1	NIHCOLE-202	980	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000666455.2	NIHCOLE-205	928	No protein	-	lncRNA		-	-
ENST00000721485.1	NIHCOLE-211	690	No protein	-	lncRNA		-	-
ENST00000721482.1	NIHCOLE-208	596	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000514769.1	NIHCOLE-201	574	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000721481.1	NIHCOLE-207	566	No protein	-	lncRNA		-	-
ENST00000721483.1	NIHCOLE-209	333	No protein	-	lncRNA		-	-
ENST00000721484.1	NIHCOLE-210	187	No protein	-	lncRNA		-	-

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Summary

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