Summary
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VAV3-AS1 ENSG00000230489

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Description

VAV3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:40608]

Location

Chromosome 1: 107,964,367-108,076,020 forward strand.

GRCh38:CM000663.2

View alleles of this gene on alternative sequences

About this gene

This gene has 14 transcripts (splice variants) and 1 gene allele.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000715653.1	VAV3-AS1-202	714	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715655.1	VAV3-AS1-204	2493	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715656.1	VAV3-AS1-205	1722	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000715660.2	VAV3-AS1-209	1670	No protein	-	lncRNA		-	-
ENST00000820017.1	VAV3-AS1-213	986	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000820015.1	VAV3-AS1-211	845	No protein	-	lncRNA		-	-
ENST00000715659.1	VAV3-AS1-208	834	No protein	-	lncRNA		-	-
ENST00000820016.1	VAV3-AS1-212	818	No protein	-	lncRNA		-	-
ENST00000715657.1	VAV3-AS1-206	814	No protein	-	lncRNA		-	-
ENST00000820014.1	VAV3-AS1-210	786	No protein	-	lncRNA		-	-
ENST00000715654.1	VAV3-AS1-203	734	No protein	-	lncRNA		-	-
ENST00000438318.1	VAV3-AS1-201	619	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000820018.1	VAV3-AS1-214	589	No protein	-	lncRNA		-	-
ENST00000715658.2	VAV3-AS1-207	578	No protein	-	lncRNA		-	-

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Summary

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