Summary
- Splice variants
- Transcript comparison
- Gene alleles
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- Secondary Structure
Comparative Genomics
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- Gene gain/loss tree
- Orthologues
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- GO: Anatomical entity
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Gene: HOTAIR ENSG00000228630

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Description

HOX transcript antisense RNA [Source:HGNC Symbol;Acc:HGNC:33510]

Gene Synonyms

HOXC-AS4, HOXC11-AS1, NCRNA00072

Location

Chromosome 12: 53,962,308-53,975,055 reverse strand.

GRCh38:CM000674.2

About this gene

This gene has 14 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000424518.6	HOTAIR-201	2415	No protein	-	lncRNA		NR_186241.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000717836.1	HOTAIR-212	2105	No protein	-	lncRNA		-	-
ENST00000717832.1	HOTAIR-208	1519	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000717835.1	HOTAIR-211	1456	No protein	-	lncRNA		-	-
ENST00000774202.1	HOTAIR-213	1451	No protein	-	lncRNA		-	-
ENST00000717833.1	HOTAIR-209	1310	No protein	-	lncRNA		-	-
ENST00000710355.2	HOTAIR-207	1166	No protein	-	lncRNA		-	-
ENST00000717834.1	HOTAIR-210	1097	No protein	-	lncRNA		-	-
ENST00000455246.6	HOTAIR-205	927	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000698798.1	HOTAIR-206	747	No protein	-	lncRNA		-	-
ENST00000425595.5	HOTAIR-202	572	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000453875.5	HOTAIR-204	562	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000439545.1	HOTAIR-203	560	No protein	-	lncRNA		-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,
ENST00000774203.1	HOTAIR-214	368	No protein	-	lncRNA		-	-

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Summary

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