Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: PGM5-AS1 ENSG00000224958

.

Description

PGM5 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:44181]

Gene Synonyms

FAM233A, LOC572558

Location

Chromosome 9: 68,343,539-68,358,022 reverse strand.

GRCh38:CM000671.2

About this gene

This gene has 17 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000763099.1	PGM5-AS1-208	1185	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000671372.2	PGM5-AS1-207	2322	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668093.1	PGM5-AS1-206	1872	No protein	-	lncRNA		-	-
ENST00000763108.1	PGM5-AS1-217	1077	No protein	-	lncRNA		-	-
ENST00000763101.1	PGM5-AS1-210	1030	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000763102.1	PGM5-AS1-211	999	No protein	-	lncRNA		-	-
ENST00000653727.2	PGM5-AS1-204	923	No protein	-	lncRNA		-	-
ENST00000763104.1	PGM5-AS1-213	907	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000657969.2	PGM5-AS1-205	800	No protein	-	lncRNA		-	-
ENST00000763107.1	PGM5-AS1-216	734	No protein	-	lncRNA		-	-
ENST00000763100.1	PGM5-AS1-209	723	No protein	-	lncRNA		-	-
ENST00000420855.7	PGM5-AS1-202	709	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000763105.1	PGM5-AS1-214	676	No protein	-	lncRNA		-	-
ENST00000653382.2	PGM5-AS1-203	653	No protein	-	lncRNA		-	-
ENST00000763103.1	PGM5-AS1-212	593	No protein	-	lncRNA		-	-
ENST00000763106.1	PGM5-AS1-215	593	No protein	-	lncRNA		-	-
ENST00000417887.1	PGM5-AS1-201	547	No protein	-	lncRNA		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

.

Summary

.

.