Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC01164 ENSG00000189275

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Description

long intergenic non-protein coding RNA 1164 [Source:HGNC Symbol;Acc:HGNC:49533]

Location

Chromosome 10: 131,772,383-131,790,199 reverse strand.

GRCh38:CM000672.2

About this gene

This gene has 19 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000341866.3	LINC01164-201	3384	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000667493.1	LINC01164-203	3225	No protein	-	lncRNA		-	-
ENST00000655798.1	LINC01164-202	2724	No protein	-	lncRNA		-	-
ENST00000751161.1	LINC01164-211	2003	No protein	-	lncRNA		-	-
ENST00000751166.1	LINC01164-216	1985	No protein	-	lncRNA		-	-
ENST00000751167.1	LINC01164-217	1973	No protein	-	lncRNA		-	-
ENST00000751159.1	LINC01164-209	1559	No protein	-	lncRNA		-	-
ENST00000751157.1	LINC01164-207	1460	No protein	-	lncRNA		-	-
ENST00000684956.2	LINC01164-204	1420	No protein	-	lncRNA		-	-
ENST00000700902.1	LINC01164-206	1345	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000688354.2	LINC01164-205	1333	No protein	-	lncRNA		-	-
ENST00000751158.1	LINC01164-208	1244	No protein	-	lncRNA		-	-
ENST00000751165.1	LINC01164-215	1145	No protein	-	lncRNA		-	-
ENST00000751164.1	LINC01164-214	1039	No protein	-	lncRNA		-	-
ENST00000751160.1	LINC01164-210	934	No protein	-	lncRNA		-	-
ENST00000751163.1	LINC01164-213	657	No protein	-	lncRNA		-	-
ENST00000751169.1	LINC01164-219	643	No protein	-	lncRNA		-	-
ENST00000751162.1	LINC01164-212	624	No protein	-	lncRNA		-	-
ENST00000751168.1	LINC01164-218	521	No protein	-	lncRNA		-	-

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Summary

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