Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00839 ENSG00000185904

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Description

long intergenic non-protein coding RNA 839 [Source:HGNC Symbol;Acc:HGNC:28269]

Location

Chromosome 10: 42,475,476-42,495,337 forward strand.

GRCh38:CM000672.2

About this gene

This gene has 16 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000659650.1	LINC00839-204	3982	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670679.1	LINC00839-209	3749	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000668072.2	LINC00839-207	3499	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000670637.2	LINC00839-208	2470	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000429940.8	LINC00839-202	2257	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000424751.3	LINC00839-201	2253	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000662209.1	LINC00839-205	2188	No protein	-	lncRNA		-	-
ENST00000653292.2	LINC00839-203	2037	No protein	-	lncRNA		-	-
ENST00000667964.1	LINC00839-206	1845	No protein	-	lncRNA		-	-
ENST00000797871.1	LINC00839-212	1744	No protein	-	lncRNA		-	-
ENST00000797870.1	LINC00839-211	1710	No protein	-	lncRNA		-	-
ENST00000797869.1	LINC00839-210	1327	No protein	-	lncRNA		-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000797875.1	LINC00839-216	1295	No protein	-	lncRNA		-	-
ENST00000797872.1	LINC00839-213	1292	No protein	-	lncRNA		-	-
ENST00000797873.1	LINC00839-214	1269	No protein	-	lncRNA		-	-
ENST00000797874.1	LINC00839-215	937	No protein	-	lncRNA		-	-

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Summary

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