Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: TJP3 ENSGALG00010028109

.

Description

tight junction protein 3 [Source:UniProtKB Gene Name;Acc:A0A8V1A7C9]

Location

Primary_assembly 28: 1,405,755-1,418,253 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028509.1

About this gene

This gene has 5 transcripts (splice variants), 201 orthologues and 3 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010068103.1	TJP3-205	3768	1077aa	ENSGALP00010041846.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1AC95	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010068106.1	TJP3-203	3484	1017aa	ENSGALP00010041849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A7C9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010068102.1	TJP3-201	3367	978aa	ENSGALP00010041845.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1AJB4	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSGALT00010068105.1	TJP3-202	3321	1014aa	ENSGALP00010041848.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1AF31	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010068101.1	TJP3-204	3166	934aa	ENSGALP00010041844.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V1A7C4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

.

Summary

.

.