Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: RAPGEF6 ENSGALG00010016017

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Description

Rap guanine nucleotide exchange factor 6 [Source:UniProtKB Gene Name;Acc:A0A8V0YUT6]

Location

Primary_assembly 13: 16,081,223-16,183,984 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028494.1

About this gene

This gene has 5 transcripts (splice variants), 207 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010038627.1	RAPGEF6-203	5348	1657aa	ENSGALP00010022349.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YWD7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010038636.1	RAPGEF6-204	5324	1649aa	ENSGALP00010022354.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YWE5	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010038655.1	RAPGEF6-205	5266	1644aa	ENSGALP00010022365.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0YUT6	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010038594.1	RAPGEF6-202	5034	1510aa	ENSGALP00010022331.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0Z125	-
ENSGALT00010038615.1	RAPGEF6-201	4992	1553aa	ENSGALP00010022343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PH44	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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