Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CLDN9 ENSGALG00010029608

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Description

claudin 9 [Source:UniProtKB Gene Name;Acc:A0A1D5PQ41]

Location

Primary_assembly 19: 1,196,884-1,206,378 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028500.1

About this gene

This gene has 4 transcripts (splice variants), 85 orthologues and 19 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010071587.1	CLDN9-202	3434	214aa	ENSGALP00010044277.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PQ41	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSGALT00010071588.1	CLDN9-201	3238	214aa	ENSGALP00010044278.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PQ41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSGALT00010071585.1	CLDN9-204	1121	214aa	ENSGALP00010044275.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PQ41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSGALT00010071586.1	CLDN9-203	1003	214aa	ENSGALP00010044276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5PQ41	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

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Summary

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