Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SPTAN1 ENSGALG00010028556

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Description

spectrin alpha, non-erythrocytic 1 [Source:NCBI gene (formerly Entrezgene);Acc:374234]

Gene Synonyms

SPECA

Location

Primary_assembly 17: 5,814,984-5,861,030 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028498.1

About this gene

This gene has 6 transcripts (splice variants), 231 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSGALT00010069173.1	SPTAN1-203	7735	2490aa	ENSGALP00010042615.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSGALT00010069176.1	SPTAN1-201	8016	2489aa	ENSGALP00010042618.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010069174.1	SPTAN1-202	7852	2485aa	ENSGALP00010042616.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSGALT00010069171.1	SPTAN1-205	7542	2446aa	ENSGALP00010042613.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSGALT00010069172.1	SPTAN1-206	7488	2428aa	ENSGALP00010042614.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSGALT00010069170.1	SPTAN1-204	7224	2405aa	ENSGALP00010042612.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-

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Summary

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