Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM7.1 ENSGALG00010002722

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Description

tripartite motif containing 7.1, MHCB region [Source:NCBI gene (formerly Entrezgene);Acc:417040]

Gene Synonyms

TRIM7

Location

Primary_assembly 16: 2,102,197-2,112,440 reverse strand.

bGalGal1.mat.broiler.GRCg7b:CM028497.1

About this gene

This gene has 5 transcripts (splice variants), 128 orthologues and 47 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010006306.1	TRIM7.1-205	2116	638aa	ENSGALP00010003905.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XE61	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010006313.1	TRIM7.1-204	2736	614aa	ENSGALP00010003909.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XHX9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSGALT00010006308.1	TRIM7.1-201	2517	576aa	ENSGALP00010003906.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XGW7	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSGALT00010006310.1	TRIM7.1-202	2421	544aa	ENSGALP00010003907.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0XB80	-
ENSGALT00010006312.1	TRIM7.1-203	2328	499aa	ENSGALP00010003908.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A8V0X739	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

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Summary

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