Domestic cat (F.catus_Fca126_mat1.0)

Domestic cat assembly and gene annotation

Assembly

The F.catus_Fca126_mat1.0 assembly was submitted by Texas A&M University and last updated on 2021-10-22. The assembly is on the chromosome level, consisting of 109 contigs assembled into 70 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 90731473 while the scaffold N50 is 148491486.

Other assemblies

Gene annotation

Genome annotation was generated using the Ensembl vertebrate annotation pipeline.

In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.

More information

General information about this species can be found in Wikipedia.

Statistics

Summary

AssemblyF.catus_Fca126_mat1.0, INSDC Assembly GCA_018350175.1, May 2021
Base Pairs2,425,730,029
Golden Path Length2,425,730,029
Annotation providerEnsembl
Annotation methodFull genebuild
Genebuild startedMay 2021
Genebuild released
Genebuild last updated/patchedAug 2021
Database version114.1

Gene counts

Coding genes19,209
Non coding genes14,844
Small non coding genes2,561
Long non coding genes12,263
Misc non coding genes20
Pseudogenes397
Gene transcripts94,384

Other

Genscan gene predictions47,415
Short Variants3,115,812