Assembly
The F.catus_Fca126_mat1.0 assembly was submitted by Texas A&M University and last updated on 2021-10-22. The assembly is on the chromosome level, consisting of 109 contigs assembled into 70 scaffolds. The N50 size is the length such that 50% of the assembled genome lies in blocks of the N50 size or longer. The N50 length for the contigs is 90731473 while the scaffold N50 is 148491486.
Other assemblies
Gene annotation
Genome annotation was generated using the Ensembl vertebrate annotation pipeline.
In accordance with the Fort Lauderdale Agreement, please check the publication status of the genome/assembly before publishing any genome-wide analyses using these data.
More information
General information about this species can be found in Wikipedia.
Statistics
Summary
Assembly | F.catus_Fca126_mat1.0, INSDC Assembly GCA_018350175.1, May 2021 |
Base Pairs | 2,425,730,029 |
Golden Path Length | 2,425,730,029 |
Annotation provider | Ensembl |
Annotation method | Full genebuild |
Genebuild started | May 2021 |
Genebuild released | |
Genebuild last updated/patched | Aug 2021 |
Database version | 114.1 |
Gene counts
Coding genes | 19,209 |
Non coding genes | 14,844 |
Small non coding genes | 2,561 |
Long non coding genes | 12,263 |
Misc non coding genes | 20 |
Pseudogenes | 397 |
Gene transcripts | 94,384 |
Other
Genscan gene predictions | 47,415 |
Short Variants | 3,115,812 |