Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS39 ENSECAG00000004287

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Description

VPS39 subunit of HOPS complex [Source:VGNC Symbol;Acc:VGNC:24929]

Location

Primary_assembly 1: 148,050,149-148,091,243 forward strand.

EquCab3.0:CM009148.1

About this gene

This gene has 4 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000006741.4	VPS39-204	4801	886aa	ENSECAP00000004823.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6ZDS9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000116611.1	VPS39-202	5608	851aa	ENSECAP00000062033.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000128606.1	VPS39-203	3249	820aa	ENSECAP00000056134.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSECAT00000006748.4	VPS39-201	2848	822aa	ENSECAP00000004830.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6ZDA1	-

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Summary

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