Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMG6 ENSECAG00000006519

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Description

SMG6 nonsense mediated mRNA decay factor [Source:VGNC Symbol;Acc:VGNC:23339]

Location

Primary_assembly 11: 45,971,037-46,183,936 reverse strand.

EquCab3.0:CM009158.1

About this gene

This gene has 8 transcripts (splice variants) and 201 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000006856.4	SMG6-207	4935	1422aa	ENSECAP00000004930.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6VUE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000113965.1	SMG6-201	6967	1411aa	ENSECAP00000057888.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0R1D4	-
ENSECAT00000142796.1	SMG6-202	5979	1410aa	ENSECAP00000080509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0SZY7	-
ENSECAT00000111412.1	SMG6-203	5832	1361aa	ENSECAP00000067086.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RWU9	-
ENSECAT00000090812.1	SMG6-204	5802	1351aa	ENSECAP00000073079.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0SE02	-
ENSECAT00000124977.1	SMG6-205	5679	1310aa	ENSECAP00000089748.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TSR5	-
ENSECAT00000126501.1	SMG6-206	5655	1302aa	ENSECAP00000070587.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0S6S2	-
ENSECAT00000033853.3	SMG6-208	4186	1312aa	ENSECAP00000035356.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HQ32	-

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Gene tree

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