Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
External references
Supporting evidence
ID History
- Gene history

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Gene: SMG5 ENSECAG00000001389

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Description

SMG5 nonsense mediated mRNA decay factor [Source:VGNC Symbol;Acc:VGNC:23338]

Location

Primary_assembly 5: 38,538,539-38,570,375 forward strand.

EquCab3.0:CM009152.1

About this gene

This gene has 5 transcripts (splice variants), 209 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000035270.2	SMG5-204	4222	1097aa	ENSECAP00000037441.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HVR7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000069802.2	SMG5-201	3895	918aa	ENSECAP00000048489.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PKT5	-
ENSECAT00000070550.2	SMG5-202	3425	1067aa	ENSECAP00000054201.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5Q091	-
ENSECAT00000003910.4	SMG5-203	3319	950aa	ENSECAP00000002713.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6X380	-
ENSECAT00000022658.4	SMG5-205	1856	370aa	ENSECAP00000018736.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6T8P7	-

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Paralogues

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