Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: CSDE1 ENSECAG00000020885

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Description

cold shock domain containing E1 [Source:VGNC Symbol;Acc:VGNC:16894]

Location

Primary_assembly 5: 50,581,630-50,628,917 forward strand.

EquCab3.0:CM009152.1

About this gene

This gene has 5 transcripts (splice variants) and 243 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000022763.3	CSDE1-205	3708	838aa	ENSECAP00000018826.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6QY89	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000022716.4	CSDE1-203	4687	807aa	ENSECAP00000018787.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6WG01	-
ENSECAT00000115366.1	CSDE1-204	4546	760aa	ENSECAP00000088311.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TMR6	-
ENSECAT00000038764.3	CSDE1-202	4086	767aa	ENSECAP00000025545.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2KQF4	-
ENSECAT00000060667.3	CSDE1-201	2374	729aa	ENSECAP00000044082.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2IE49	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data