Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL18A1 ENSECAG00000016361

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Description

collagen type XVIII alpha 1 chain [Source:VGNC Symbol;Acc:VGNC:16728]

Location

Primary_assembly 26: 41,808,023-41,917,506 forward strand.

EquCab3.0:CM009173.1

About this gene

This gene has 3 transcripts (splice variants), 155 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000017715.4	COL18A1-201	6233	1753aa	ENSECAP00000014403.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6XNR9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000017756.4	COL18A1-203	4318	1337aa	ENSECAP00000014439.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6XHX6	-
ENSECAT00000044509.3	COL18A1-202	4201	1320aa	ENSECAP00000046138.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2IKM8	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data