Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VCL ENSECAG00000013481

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Description

vinculin [Source:VGNC Symbol;Acc:VGNC:24892]

Location

Primary_assembly 1: 62,056,462-62,167,752 forward strand.

EquCab3.0:CM009148.1

About this gene

This gene has 10 transcripts (splice variants), 273 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000143996.1	VCL-204	7341	1352aa	ENSECAP00000066339.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RX02	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000081765.1	VCL-207	14651	1144aa	ENSECAP00000065762.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RV84	-
ENSECAT00000097876.1	VCL-209	12776	940aa	ENSECAP00000080022.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0SVF6	-
ENSECAT00000110945.1	VCL-208	5602	973aa	ENSECAP00000068690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RXZ0	-
ENSECAT00000103894.1	VCL-206	5505	1078aa	ENSECAP00000085621.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TBG2	-
ENSECAT00000112651.1	VCL-203	5296	1014aa	ENSECAP00000061940.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RJD2	-
ENSECAT00000139281.1	VCL-202	5099	1028aa	ENSECAP00000063724.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RPS5	-
ENSECAT00000075921.2	VCL-210	3810	1109aa	ENSECAP00000047907.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PHR4	-
ENSECAT00000014559.3	VCL-205	3526	1096aa	ENSECAP00000011648.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6ZSZ5	-
ENSECAT00000113759.1	VCL-201	806	172aa	ENSECAP00000065821.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RSY2	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data