Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX13 ENSECAG00000012249

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Description

SRY-box transcription factor 13 [Source:VGNC Symbol;Acc:VGNC:23458]

Location

Primary_assembly 5: 672,535-755,169 forward strand.

EquCab3.0:CM009152.1

About this gene

This gene has 4 transcripts (splice variants), 211 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000080901.1	SOX13-202	5681	654aa	ENSECAP00000061194.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0REF1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000105095.1	SOX13-201	5812	616aa	ENSECAP00000063381.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RKQ4	-
ENSECAT00000012943.4	SOX13-203	3738	613aa	ENSECAP00000010234.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6SSC4	-
ENSECAT00000113340.1	SOX13-204	3666	589aa	ENSECAP00000087041.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TKA7	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data