Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LTN1 ENSECAG00000010824

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Description

listerin E3 ubiquitin protein ligase 1 [Source:VGNC Symbol;Acc:VGNC:19836]

Location

Primary_assembly 26: 26,738,758-26,862,220 reverse strand.

EquCab3.0:CM009173.1

About this gene

This gene has 6 transcripts (splice variants) and 211 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000011535.4	LTN1-206	6770	1828aa	ENSECAP00000009027.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6ZU08	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000109277.1	LTN1-202	8018	1571aa	ENSECAP00000063872.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RM66	-
ENSECAT00000104381.1	LTN1-205	6377	1697aa	ENSECAP00000067807.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RYR4	-
ENSECAT00000038263.3	LTN1-203	5362	1552aa	ENSECAP00000027683.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2H3A1	-
ENSECAT00000121287.1	LTN1-201	3039	132aa	ENSECAP00000083057.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T7H9	-
ENSECAT00000142869.1	LTN1-204	3011	145aa	ENSECAP00000081126.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T4C8	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data