Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HMBOX1 ENSECAG00000008240

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Description

homeobox containing 1 [Source:VGNC Symbol;Acc:VGNC:18800]

Location

Primary_assembly 2: 57,812,017-58,191,270 forward strand.

EquCab3.0:CM009149.1

About this gene

This gene has 6 transcripts (splice variants) and 278 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000008521.3	HMBOX1-201	2567	458aa	ENSECAP00000006391.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6V2F8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000103565.1	HMBOX1-206	6105	390aa	ENSECAP00000060781.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RGJ4	-
ENSECAT00000101531.1	HMBOX1-202	4743	378aa	ENSECAP00000083156.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T4E7	-
ENSECAT00000084009.1	HMBOX1-203	4690	400aa	ENSECAP00000082262.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T6U3	-
ENSECAT00000075746.2	HMBOX1-204	4507	406aa	ENSECAP00000052010.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PW47	-
ENSECAT00000082076.1	HMBOX1-205	4431	385aa	ENSECAP00000066476.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RV26	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data