Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
- Breeds
  - Gene tree
  - Orthologues
  - Paralogues
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VPS41 ENSECAG00000006943

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Description

VPS41 subunit of HOPS complex [Source:VGNC Symbol;Acc:VGNC:24930]

Location

Primary_assembly 4: 10,146,951-10,350,152 reverse strand.

EquCab3.0:CM009151.1

About this gene

This gene has 10 transcripts (splice variants) and 208 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000102283.1	VPS41-201	4006	864aa	ENSECAP00000068430.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RX83	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000094343.1	VPS41-210	11844	837aa	ENSECAP00000057573.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0R0I9	-
ENSECAT00000057462.2	VPS41-202	3973	790aa	ENSECAP00000036357.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2LA27	-
ENSECAT00000055934.2	VPS41-203	3958	849aa	ENSECAP00000046657.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2IDY7	-
ENSECAT00000007842.3	VPS41-204	3896	841aa	ENSECAP00000005797.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7DBY1	-
ENSECAT00000048439.2	VPS41-205	3870	832aa	ENSECAP00000041112.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2I5Z2	-
ENSECAT00000077459.2	VPS41-206	3861	829aa	ENSECAP00000053415.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PYD8	-
ENSECAT00000037620.2	VPS41-207	3858	828aa	ENSECAP00000041985.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2LKK8	-
ENSECAT00000063226.2	VPS41-208	3843	823aa	ENSECAP00000032590.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HE37	-
ENSECAT00000007739.3	VPS41-209	3807	811aa	ENSECAP00000005704.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F7DLZ2	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues (Not available)

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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