Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: HOXC4 ENSECAG00000003682

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Description

homeobox C6 [Source:VGNC Symbol;Acc:VGNC:18850]

Location

Primary_assembly 6: 71,785,332-71,822,454 forward strand.

EquCab3.0:CM009153.1

About this gene

This gene has 7 transcripts (splice variants), 204 orthologues and 36 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000091631.1	HOXC4-207	1849	312aa	ENSECAP00000083137.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T7Q3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000120327.1	HOXC4-204	5320	243aa	ENSECAP00000065480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RS93	-
ENSECAT00000033562.2	HOXC4-203	1963	264aa	ENSECAP00000036318.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2HZM4	-
ENSECAT00000003767.4	HOXC4-202	1643	235aa	ENSECAP00000002627.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6Y566	-
ENSECAT00000112702.1	HOXC4-206	1593	222aa	ENSECAP00000075005.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0SLY5	-
ENSECAT00000036032.2	HOXC4-201	1467	161aa	ENSECAP00000043212.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2IBK8	-
ENSECAT00000139394.1	HOXC4-205	1467	221aa	ENSECAP00000055958.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0QZN2	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data