Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LHX6 ENSECAG00000024502

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Description

LIM homeobox 6 [Source:UniProtKB Gene Name;Acc:A0A3Q2GTM4]

Location

Primary_assembly 25: 26,252,640-26,299,230 reverse strand.

EquCab3.0:CM009172.1

About this gene

This gene has 9 transcripts (splice variants), 271 orthologues and 20 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000080138.1	LHX6-206	3659	463aa	ENSECAP00000088348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TPS2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000139078.1	LHX6-207	4787	176aa	ENSECAP00000084961.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TCW0	-
ENSECAT00000098749.1	LHX6-204	3625	419aa	ENSECAP00000056382.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0QY30	-
ENSECAT00000099259.1	LHX6-208	3546	377aa	ENSECAP00000084858.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0TE51	-
ENSECAT00000078417.2	LHX6-205	3187	366aa	ENSECAP00000049727.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PN02	-
ENSECAT00000078242.2	LHX6-202	2237	368aa	ENSECAP00000051078.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PRH8	-
ENSECAT00000083060.1	LHX6-203	2098	183aa	ENSECAP00000079866.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0T0U0	-
ENSECAT00000026360.4	LHX6-209	1905	399aa	ENSECAP00000021984.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6YQ13	-
ENSECAT00000043994.3	LHX6-201	1785	355aa	ENSECAP00000023956.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2GTM4	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data