Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL6A3 ENSECAG00000020887

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Description

collagen type VI alpha 3 chain [Source:VGNC Symbol;Acc:VGNC:16748]

Location

Primary_assembly 6: 23,386,090-23,470,487 reverse strand.

EquCab3.0:CM009153.1

About this gene

This gene has 4 transcripts (splice variants), 368 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000066402.2	COL6A3-203	10739	3273aa	ENSECAP00000051752.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A5F5PTP6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000022862.3	COL6A3-201	12069	3142aa	ENSECAP00000018917.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6R735	-
ENSECAT00000022876.3	COL6A3-202	11469	2942aa	ENSECAP00000018929.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6QAT0	-
ENSECAT00000042797.2	COL6A3-204	9518	2866aa	ENSECAP00000024487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2GUU5	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data