Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: TRIM56 ENSECAG00000019517

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Description

tripartite motif containing 56 [Source:VGNC Symbol;Acc:VGNC:112289]

Location

Primary_assembly 13: 9,362,037-9,372,171 forward strand.

EquCab3.0:CM009160.1

About this gene

This gene has 7 transcripts (splice variants), 118 orthologues and 78 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000131265.1	TRIM56-207	8319	771aa	ENSECAP00000073060.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000081532.1	TRIM56-206	7982	771aa	ENSECAP00000070734.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	-
ENSECAT00000111333.1	TRIM56-202	2831	771aa	ENSECAP00000082581.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	-
ENSECAT00000020660.3	TRIM56-205	2579	771aa	ENSECAP00000016966.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	-
ENSECAT00000136571.1	TRIM56-201	2526	771aa	ENSECAP00000079800.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	-
ENSECAT00000135832.1	TRIM56-204	2419	771aa	ENSECAP00000068151.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6UH74	-
ENSECAT00000147276.1	TRIM56-203	2360	714aa	ENSECAP00000055650.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0QWY4	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data