Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PRRX1 ENSECAG00000008539

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Description

paired related homeobox 1 [Source:VGNC Symbol;Acc:VGNC:21912]

Location

Primary_assembly 5: 6,934,075-7,026,659 forward strand.

EquCab3.0:CM009152.1

About this gene

This gene has 3 transcripts (splice variants), 219 orthologues and 46 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSECAT00000008680.3	PRRX1-203	1707	255aa	ENSECAP00000006526.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6WAC4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSECAT00000030099.2	PRRX1-201	10502	231aa	ENSECAP00000038563.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A3Q2LDV0	-
ENSECAT00000126062.1	PRRX1-202	3595	217aa	ENSECAP00000066460.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A9L0RRG4	-

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Breeds

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Genomic alignments

Gene tree

Orthologues

Paralogues

Families (Not available)

More views of comparative genomics data, such as multiple alignments and synteny, are available on the Location page for this gene.

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Personal Data