Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: Herc4 FBgn0035207

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Description

HECT and RLD domain containing E3 ubiquitin ligase 4

Gene Synonyms

Herc4

Location

Primary_assembly 3L: 1,313,696-1,318,330 forward strand.

BDGP6.54:AE014296.5

About this gene

This gene has 3 transcripts (splice variants), 192 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0310555	Herc4-RC	3766	1062aa	FBpp0302692	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E8NHA2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0072671	Herc4-RA	3820	1058aa	FBpp0072564	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q8MQN4 Q9W0H2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
FBtr0072670	Herc4-RB	3754	1058aa	FBpp0072563	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9W0H2	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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