Summary
- Splice variants
- Transcript comparison
- Gene alleles
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Comparative Genomics
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Gene: Caf1-55 FBgn0263979

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Description

Chromatin assembly factor 1, p55 subunit

Gene Synonyms

Caf1-55

Location

Primary_assembly 3R: 15,225,576-15,227,564 forward strand.

BDGP6.54:AE014297.3

About this gene

This gene has 2 transcripts (splice variants), 202 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0083052	Caf1-55-RA	1828	430aa	FBpp0082511	Gene/transcipt that contains an open reading frame (ORF).Protein coding	C0MJE4 Q24572	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
FBtr0301845	Caf1-55-RB	1825	429aa	FBpp0291059	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E1JIL4	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,

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Summary

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