Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
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- Gene gain/loss tree
- Orthologues
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Ontologies
- GO: Anatomical entity
Phenotypes
Genetic Variation
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- Structural variants
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External references
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ID History
- Gene history

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Gene: Chd1 FBgn0250786

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Description

Chromodomain-helicase-DNA-binding protein 1

Gene Synonyms

Chd1

Location

Primary_assembly 2L: 2,979,562-2,987,723 reverse strand.

BDGP6.54:AE014134.6

About this gene

This gene has 3 transcripts (splice variants), 5 orthologues and 16 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
FBtr0305980	Chd1-RB	6216	1900aa	FBpp0297122	Gene/transcipt that contains an open reading frame (ORF).Protein coding	M9ND16	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
FBtr0331654	Chd1-RC	6463	1881aa	FBpp0304044	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1PG01 M9PEB2 Q8SWV9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
FBtr0077674	Chd1-RA	6332	1883aa	FBpp0077358	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B1PFS9 B1PFT0 B1PFT1 B1PFT7 B1PFT9 B1PFU1 B1PFV0 B1PFV8 B1PFZ0 B1PFZ1 B1PFZ4 B1PG07 B1PG10 B1PG15 C0HBU2 Q6NP59 Q7KU24 R9TG69	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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