Transcript: ENSDART00000160438.2 PSMD4-201

Description

proteasome 26S subunit ubiquitin receptor, non-ATPase 4a [Source:ZFIN;Acc:ZDB-GENE-040625-104]

Location

About this transcript

This transcript has 10 exons, is annotated with 24 domains and features, is associated with 222 variant alleles and maps to 182 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000160438.2	PSMD4-201	1392	372aa	ENSDARP00000138300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6IQC6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162793.2	PSMD4-203	678	203aa	ENSDARP00000133816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000169204.2	PSMD4-202	746	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,392 bps, Translation length: 372 residues

Version

ENSDART00000160438.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.