Transcript: ENSDART00000147342.2 rgp1-202

Description

GP1 homolog, RAB6A GEF complex partner 1 [Source:ZFIN;Acc:ZDB-GENE-040718-352]

Gene Synonyms

zgc:92283

Location

About this transcript

This transcript has 2 exons, is associated with 287 variant alleles and maps to 164 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000048921.7	rgp1-201	1984	386aa	ENSDARP00000048920.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHI8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181037.1	rgp1-203	5946	386aa	ENSDARP00000147197.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHI8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000147342.2	rgp1-202	398	38aa	ENSDARP00000117589.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QES3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 398 bps, Translation length: 38 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000147342.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.