Transcript: ENSDART00000142096.3 cyt1l-203

Description

type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]

Location

About this transcript

This transcript has 5 exons, is associated with 6 variant alleles and maps to 157 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105036.7	cyt1l-202	1419	429aa	ENSDARP00000095806.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LXJ7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000142096.3	cyt1l-203	790	77aa	ENSDARP00000125768.1	Nonsense mediated decay	I3ISA0	-
ENSDART00000105034.6	cyt1l-201	850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 2, Transcript length: 790 bps, Translation length: 77 residues

Version

ENSDART00000142096.3

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.