Transcript: ENSDART00000140089.2 cngb1a-201

Description

cyclic nucleotide gated channel subunit beta 1a [Source:ZFIN;Acc:ZDB-GENE-050419-164]

Gene Synonyms

si:ch211-160j6.1

Location

Chromosome 18: 45,504,362-45,517,671 forward strand.

About this transcript

This transcript has 14 exons, is annotated with 22 domains and features, is associated with 362 variant alleles and maps to 142 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000068242.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000183725.1	cngb1a-202	2469	822aa	ENSDARP00000154080.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QM30	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000140089.2	cngb1a-201	1837	613aa	ENSDARP00000117726.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QZH8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 14, Coding exons: 14, Transcript length: 1,837 bps, Translation length: 613 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000140089.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000140089.2 cngb1a-201

Summary

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Transcript: ENSDART00000140089.2 cngb1a-201

Summary

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