Transcript: ENSDART00000138852.3 lcorl-203

Description

ligand dependent nuclear receptor corepressor-like [Source:ZFIN;Acc:ZDB-GENE-030131-6300]

Gene Synonyms

fi43c07, im:7138788, si:dkeyp-26a9.6, wu:fi43c07

Location

Chromosome 1: 23,573,224-23,595,921 reverse strand.

About this transcript

This transcript has 8 exons, is annotated with 22 domains and features, is associated with 383 variant alleles and maps to 214 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000070098.7 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000138852.3	lcorl-203	6841	1673aa	ENSDARP00000118938.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QHP0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000155184.3	lcorl-204	3048	570aa	ENSDARP00000128036.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WCT9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000134860.3	lcorl-202	739	217aa	ENSDARP00000117840.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QN78	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000102600.5	lcorl-201	439	146aa	ENSDARP00000093375.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F5H8N5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 6,841 bps, Translation length: 1,673 residues

Version

ENSDART00000138852.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSDART00000138852.3 lcorl-203

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Transcript: ENSDART00000138852.3 lcorl-203

Summary

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