Transcript: ENSDART00000138765.2 cacna1aa-202

Description

calcium channel, voltage-dependent, P/Q type, alpha 1A subunit, a [Source:ZFIN;Acc:ZDB-GENE-040724-26]

Gene Synonyms

ZfCav2.1, cacna1a, si:ch211-237k17.1

Location

About this transcript

This transcript has 43 exons, is annotated with 73 domains and features, is associated with 1177 variant alleles and maps to 124 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013228.9	cacna1aa-201	6798	2265aa	ENSDARP00000023232.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QJF6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138765.2	cacna1aa-202	5851	1939aa	ENSDARP00000116045.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHB2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000144774.3	cacna1aa-203	5848	1938aa	ENSDARP00000118181.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHB1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 43, Coding exons: 43, Transcript length: 5,851 bps, Translation length: 1,939 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000138765.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.