Transcript: ENSDART00000138754.4 col6a3-205

Description

collagen, type VI, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-070501-8]

Gene Synonyms

wu:fb06e12, wu:fs74g09

Location

Chromosome 9: 23,914,317-23,944,470 reverse strand.

About this transcript

This transcript has 50 exons, is annotated with 121 domains and features, is associated with 32 variant alleles and maps to 229 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000077139.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000138754.4	col6a3-205	11949	3733aa	ENSDARP00000123601.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QKE8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000113176.4	col6a3-201	8565	2854aa	ENSDARP00000103149.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q4X1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145734.3	col6a3-206	1209	320aa	ENSDARP00000122619.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QV92	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135769.2	col6a3-203	914	305aa	ENSDARP00000118193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QMR9	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000133706.2	col6a3-202	894	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000138402.2	col6a3-204	849	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 50, Coding exons: 50, Transcript length: 11,949 bps, Translation length: 3,733 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000138754.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000138754.4 col6a3-205

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000138754.4 col6a3-205

Summary

About Us

Get help

Our sister sites

Follow us