Transcript: ENSDART00000136103.3 ubap2a-202

Description

ubiquitin associated protein 2a [Source:ZFIN;Acc:ZDB-GENE-070424-16]

Gene Synonyms

ubap2, zgc:158449

Location

About this transcript

This transcript has 27 exons, is annotated with 37 domains and features, is associated with 616 variant alleles and maps to 160 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000136103.3	ubap2a-202	4249	1169aa	ENSDARP00000120498.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QDR0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000109292.2	ubap2a-201	4173	1168aa	ENSDARP00000097523.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QV64	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 27, Coding exons: 26, Transcript length: 4,249 bps, Translation length: 1,169 residues

Version

ENSDART00000136103.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.