Transcript: ENSDART00000104405.5 ccl25b-201

Description

chemokine (C-C motif) ligand 25b [Source:ZFIN;Acc:ZDB-GENE-110222-2]

Gene Synonyms

CCL-chr11a, Dr11_WGA839_1_159228, ccl21, dr-chr11-CCL21-36.7%-DN

Location

About this transcript

This transcript has 4 exons, is annotated with 10 domains and features, is associated with 291 variant alleles and maps to 195 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000104405.5	ccl25b-201	806	106aa	ENSDARP00000095178.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBE9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000181974.1	ccl25b-203	3370	106aa	ENSDARP00000153984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBE9	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000162178.2	ccl25b-202	883	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 806 bps, Translation length: 106 residues

Version

ENSDART00000104405.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.