Transcript: ENSDART00000048073.7 zgc:171775-201

Description

zgc:171775 [Source:ZFIN;Acc:ZDB-GENE-030131-4309]

Gene Synonyms

fc89f08, wu:fc89f08

Location

About this transcript

This transcript has 12 exons, is annotated with 17 domains and features, is associated with 361 variant alleles and maps to 116 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000048073.7	zgc:171775-201	3962	359aa	ENSDARP00000048072.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QHF2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145026.3	zgc:171775-202	534	100aa	ENSDARP00000116511.1	Nonsense mediated decay	E9QBD3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145232.2	zgc:171775-203	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 3,962 bps, Translation length: 359 residues

Version

ENSDART00000048073.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.