Transcript: ENSDART00000167185.2 nup153-202

Description

nucleoporin 153 [Source:ZFIN;Acc:ZDB-GENE-030131-4581]

Location

Chromosome 19: 46,025,162-46,032,556 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 7 domains and features, is associated with 257 variant alleles and maps to 109 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000099972.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170409.2	nup153-203	5513	1436aa	ENSDARP00000141671.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IVZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163815.2	nup153-201	717	239aa	ENSDARP00000131525.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000167185.2	nup153-202	578	192aa	ENSDARP00000132131.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000172521.2	nup153-205	926	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000171677.2	nup153-204	588	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 578 bps, Translation length: 192 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000167185.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000167185.2 nup153-202

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Transcript: ENSDART00000167185.2 nup153-202

Summary

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