Transcript: ENSDART00000152515.2 itgam-201

Description

integrin, alpha M (complement component 3 receptor 3 subunit) [Source:ZFIN;Acc:ZDB-GENE-110510-4]

Gene Synonyms

cd11b, si:dkey-32n7.5

Location

Chromosome 12: 4,160,804-4,167,750 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 5 domains and features, is associated with 263 variant alleles and maps to 15 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000096587.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000171640.2	itgam-203	2343	780aa	ENSDARP00000133914.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJT2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000166191.2	itgam-202	2213	738aa	ENSDARP00000135030.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IME5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000152515.2	itgam-201	694	232aa	ENSDARP00000126850.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GED7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 694 bps, Translation length: 232 residues

Incomplete CDS

5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete

Version

ENSDART00000152515.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000152515.2 itgam-201

Summary

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Transcript: ENSDART00000152515.2 itgam-201

Summary

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