Transcript: ENSDART00000139641.3 VPS36-205

Description

vacuolar protein sorting 36 homolog [Source:ZFIN;Acc:ZDB-GENE-030131-7753]

Location

Chromosome 10: 24,643,079-24,663,715 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 480 variant alleles and maps to 49 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000057021.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	Flags
ENSDART00000079597.4	VPS36-204	1904	382aa	ENSDARP00000074049.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190695.1	VPS36-206	4791	410aa	ENSDARP00000154878.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-
ENSDART00000142617.3	VPS36-203	658	147aa	ENSDARP00000113042.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000139641.3	VPS36-205	610	161aa	ENSDARP00000122484.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000147974.2	VPS36-201	908	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-
ENSDART00000142893.2	VPS36-202	478	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 610 bps, Translation length: 161 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139641.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139641.3 VPS36-205

Summary

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Transcript: ENSDART00000139641.3 VPS36-205

Summary

About Us

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