Transcript: ENSDART00000123801.3 kdm7aa-202

Description

lysine (K)-specific demethylase 7Aa [Source:ZFIN;Acc:ZDB-GENE-030131-9829]

Location

Chromosome 4: 22,505,617-22,519,525 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 9 domains and features, is associated with 381 variant alleles and maps to 98 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000018111.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000123801.3	kdm7aa-202	841	188aa	ENSDARP00000111845.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000186258.1	kdm7aa-204	3094	837aa	ENSDARP00000147148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RKB3	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000130409.3	kdm7aa-203	2628	875aa	ENSDARP00000104491.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RHD1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000002851.9	kdm7aa-201	1848	613aa	ENSDARP00000012964.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 841 bps, Translation length: 188 residues

Version

ENSDART00000123801.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000123801.3 kdm7aa-202

Summary

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Transcript: ENSDART00000123801.3 kdm7aa-202

Summary

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