Transcript: ENSDART00000112118.5 trim107-201

Description

tripartite motif containing 107 [Source:ZFIN;Acc:ZDB-GENE-110919-5]

Location

About this transcript

This transcript has 4 exons, is annotated with 23 domains and features, is associated with 240 variant alleles and maps to 61 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000192993.1	trim107-203	5021	469aa	ENSDARP00000149545.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R358	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000112118.5	trim107-201	1492	469aa	ENSDARP00000099771.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R358	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000156305.2	trim107-202	605	148aa	ENSDARP00000128240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 4, Coding exons: 3, Transcript length: 1,492 bps, Translation length: 469 residues

Version

ENSDART00000112118.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.